Cookies Policy
X

This site uses cookies. By continuing to browse the site you are agreeing to our use of cookies.

I accept this policy

Find out more here

Incorporating genomic methods into contact networks to reveal new insights into animal behaviour and infectious disease dynamics

No metrics data to plot.
The attempt to load metrics for this article has failed.
The attempt to plot a graph for these metrics has failed.
The full text of this article is not currently available.

Brill’s MyBook program is exclusively available on BrillOnline Books and Journals. Students and scholars affiliated with an institution that has purchased a Brill E-Book on the BrillOnline platform automatically have access to the MyBook option for the title(s) acquired by the Library. Brill MyBook is a print-on-demand paperback copy which is sold at a favorably uniform low price.

Access this advance article

+ Tax (if applicable)
Add to Favorites
You must be logged in to use this functionality
image of Behaviour

Affiliations: 1: Department of Veterinary Population Medicine, University of Minnesota, Minneapolis, MN 55455, USA

*Corresponding author’s e-mail address: jone1354@umn.edu
10.1163/1568539X-00003471
/content/journals/10.1163/1568539x-00003471
dcterms_title,pub_keyword,dcterms_description,pub_author
10
5
Loading
Loading

Full text loading...

/content/journals/10.1163/1568539x-00003471
Loading

Data & Media loading...

http://brill.metastore.ingenta.com/content/journals/10.1163/1568539x-00003471
Loading

Article metrics loading...

/content/journals/10.1163/1568539x-00003471
2018-02-02
2018-06-20
1. Anderson R.M., May R.M. (1991). Infectious diseases of humans: dynamics and control. — Oxford University Press, Oxford.
2. Archie E.A., Luikart G., Ezenwa V.O. (2009). "Infecting epidemiology with genetics: a new frontier in disease ecology". — Trends Ecol. Evol. Vol 24: 21-30. [Crossref]
3. Baele G., Suchard M.A., Rambaut A., Lemey P. (2017). "Emerging concepts of data integration in pathogen phylodynamics". — Syst. Biol. Vol 66: e47-e65.
4. Becker D.J., Streicker D.G., Altizer S. (2015). "Linking anthropogenic resources to wildlife-pathogen dynamics: a review and meta-analysis". — Ecol. Lett. Vol 18: 483-495. [Crossref]
5. Biek R., Drummond A.J., Poss M. (2006). "A virus reveals population structure and recent demographic history of its carnivore host". — Science Vol 311: 538-541. [Crossref]
6. Biek R., Henderson J.C., Waller L.A., Rupprecht C.E., Real L.A. (2007). "A high-resolution genetic signature of demographic and spatial expansion in epizootic rabies virus". — Proc. Natl. Acad. Sci. USA Vol 104: 7993-7998. [Crossref]
7. Bird B.H., Khristova M.L., Rollin P.E., Ksiazek T.G., Nichol S.T. (2007). "Complete genome analysis of 33 ecologically and biologically diverse Rift Valley fever virus strains reveals widespread virus movement and low genetic diversity due to recent common ancestry". — J. Virol. Vol 81: 2805-2816. [Crossref]
8. Blanchong J.A., Samuel M.D., Scribner K.T., Weckworth B.V., Langenberg J.A., Filcek K.B. (2007). "Landscape genetics and the spatial distribution of chronic wasting disease". — Biol. Lett. Vol 4: 130-133. [Crossref]
9. Blasse A., Calvignac-Spencer S., Merkel K., Goffe A.S., Boesch C., Mundry R., Leendertz F.H. (2013). "Mother-offspring transmission and age-dependent accumulation of simian foamy virus in wild chimpanzees". — J. Virol. Vol 87: 5193-5204. [Crossref]
10. Blyton M.D.J., Banks S.C., Peakall R., Gordon D.M. (2013). "High temporal variability in commensal Escherichia coli strain communities of a herbivorous marsupial". — Environ. Microbiol. Vol 15: 2162-2172. [Crossref]
11. Blyton M.D.J., Banks S.C., Peakall R., Lindenmayer D.B., Gordon D.M. (2014). "Not all types of host contacts are equal when it comes to E. coli transmission". — Ecol. Lett. Vol 17: 970-978. [Crossref]
12. Buhnerkempe M.G., Roberts M.G., Dobson A.P., Heesterbeek H., Hudson P.J., Lloyd-Smith J.O. (2015). "Eight challenges in modelling disease ecology in multi-host, multi-agent systems". — Epidemics Vol 10: 26-30. [Crossref]
13. Bull C.M., Godfrey S.S., Gordon D.M. (2012). "Social networks and the spread of Salmonella in a sleepy lizard population". — Mol. Ecol. Vol 21: 4386-4392. [Crossref]
14. Carnegie N.B. (2017). Effects of contact network structure on epidemic transmission trees: implications for data required to estimate network structure. — Stat. Med., in press. DOI:10.1002/sim.7259.
15. Chamie G., Wandera B., Marquez C., Kato-Maeda M., Kamya M.R., Havlir D.V., Charlebois E.D. (2015). "Identifying locations of recent TB transmission in rural Uganda: a multidisciplinary approach". — Trop. Med. Int. Health Vol 20: 537-545. [Crossref]
16. Chen S., White B.J., Sanderson M.W., Amrine D.E., Ilany A., Lanzas C. (2014). "Highly dynamic animal contact network and implications on disease transmission". — Sci. Rep. Vol 4: 4472.
17. Chiyo P.I., Grieneisen L.E., Wittemyer G., Moss C.J., Lee P.C., Douglas-Hamilton I., Archie E.A. (2014). "The influence of social structure, habitat, and host traits on the transmission of Escherichia coli in wild elephants". — PLoS One Vol 9: e93408. [Crossref]
18. Colijn C., Gardy J. (2014). "Phylogenetic tree shapes resolve disease transmission patterns". — Evol. Med. Publ. Health: 96-108. [Crossref]
19. Cottam E.M., Thébaud G., Wadsworth J., Gloster J., Mansley L., Paton D.J., King D.P., Haydon D.T. (2008). "Integrating genetic and epidemiological data to determine transmission pathways of foot-and-mouth disease virus". — Proc. Roy. Soc. Lond. B: Biol. Sci. Vol 275: 887-895. [Crossref]
20. Craft M.E. (2015). "Infectious disease transmission and contact networks in wildlife and livestock". — Philos. Trans. Roy. Soc. Lond. B: Biol. Sci. Vol 370: 20140107. [Crossref]
21. Craft M.E., Caillaud D. (2011). "Network models: an underutilized tool in wildlife epidemiology?". — Interdiscipl. Perspect. Infect. Dis.: 676949.
22. Craft M.E., Volz E., Packer C., Meyers L.A. (2009). "Distinguishing epidemic waves from disease spillover in a wildlife population". — Proc. Roy. Soc. Lond. B: Biol. Sci. Vol 276: 1777-1785. [Crossref]
23. Craft M.E., Volz E., Packer C., Meyers L.A. (2011). "Disease transmission in territorial populations: the small-world network of Serengeti lions". — J. Roy. Soc. Interface Vol 8: 776-786. [Crossref]
24. Croft D.P., James R., Krause J. (2008). Exploring animal social networks. — Princeton University Press, Princeton, NJ. [Crossref]
25. Cullingham C.I., Kyle C.J., Pond B.A., Rees E.E., White B.N. (2009). "Differential permeability of rivers to raccoon gene flow corresponds to rabies incidence in Ontario, Canada". — Mol. Ecol. Vol 18: 43-53.
26. de Carvalho Ferreira H.C., Weesendorp E., Quak S., Stegeman J.A., Loeffen W.L.A. (2014). "Suitability of faeces and tissue samples as a basis for non-invasive sampling for African swine fever in wild boar". — Vet. Microbiol. Vol 172: 449-454. [Crossref]
27. De Maio N., Wu C.-H., O’Reilly K.M., Wilson D. (2015). "New routes to phylogeography: a Bayesian structured coalescent approximation". — PLoS Genet. Vol 11: e1005421.
28. De Maio N., Wu C.-H., Wilson D.J. (2016). "SCOTTI: efficient reconstruction of transmission within outbreaks with the structured coalescent". — PLoS Comput. Biol. Vol 12: e1005130.
29. Degnan P.H., Pusey A.E., Lonsdorf E.V., Goodall J., Wroblewski E.E., Wilson M.L., Rudicell R.S., Hahn B.H., Ochman H. (2012). "Factors associated with the diversification of the gut microbial communities within chimpanzees from Gombe National Park". — Proc. Natl. Acad. Sci. USA Vol 109: 13034-13039. [Crossref]
30. Didelot X., Fraser C., Gardy J., Colijn C. (2017). "Genomic infectious disease epidemiology in partially sampled and ongoing outbreaks". — Mol. Biol. Evol. Vol 34: 997-1007.
31. Didelot X., Gardy J., Colijn C. (2014). "Bayesian inference of infectious disease transmission from whole-genome sequence data". — Mol. Biol. Evol. Vol 31: 1869-1879. [Crossref]
32. Dizney L., Dearing M.D. (2013). "The role of behavioural heterogeneity on infection patterns: implications for pathogen transmission". — Anim. Behav. Vol 86: 911-916. [Crossref]
33. Drewe J.A. (2010). "Who infects whom? Social networks and tuberculosis transmission in wild meerkats". — Proc. Roy. Soc. Lond. B: Biol. Sci. Vol 277: 633-642. [Crossref]
34. Drummond A.J., Rambaut A. (2007). "BEAST: Bayesian evolutionary analysis by sampling trees". — BMC Evol. Biol. Vol 7: 214. [Crossref]
35. Eames K., Bansal S., Frost S., Riley S. (2015). "Six challenges in measuring contact networks for use in modelling". — Epidemics Vol 10: 72-77. [Crossref]
36. Ferrier S., Manion G., Elith J., Richardson K. (2007). "Using generalized dissimilarity modelling to analyse and predict patterns of beta diversity in regional biodiversity assessment". — Divers. Distrib. Vol 13: 252-264. [Crossref]
37. Fountain-Jones N.M., Craft M.E., Funk W.C., Kozakiewicz C., Trumbo D., Boydston E.E., Lyren L.M., Crooks K., Lee J.S., VandeWoude S., Carver S. (2017a). "Urban landscapes can change virus gene flow and evolution in a fragmentation-sensitive carnivore". — Mol. Ecol. Vol 26: 6487-6498. [Crossref]
38. Fountain-Jones N.M., Packer C., Troyer J.L., VanderWaal K., Robinson S., Jacquot M., Craft M.E. (2017b). "Linking social and spatial networks to viral community phylogenetics reveals subtype-specific transmission dynamics in African lions". — J. Anim. Ecol. Vol 86: 1469-1482. [Crossref]
39. Francis S.S., Plucinski M.M., Wallace A.D., Riley L.W. (2016). "Genotyping oral commensal bacteria to predict social contact and structure". — PLoS One Vol 11: e0160201.
40. Gardy J.L., Johnston J.C., Ho Sui S.J., Cook V.J., Shah L., Brodkin E., Rempel S., Moore R., Zhao Y., Holt R., Varhol R., Birol I., Lem M., Sharma M.K., Elwood K., Jones S.J.M., Brinkman F.S.L., Brunham R.C., Tang P. (2011). "Whole-genome sequencing and social-network analysis of a tuberculosis outbreak". — N. Engl. J. Med. Vol 364: 730-739. [Crossref]
41. Godfrey S.S. (2013). "Networks and the ecology of parasite transmission: a framework for wildlife parasitology". — Int. J. Parasitol. Parasit. Wildl. Vol 2: 235-245. [Crossref]
42. Gottdenker N.L., Streicker D.G., Faust C.L., Carroll C.R. (2014). "Anthropogenic land use change and infectious diseases: a review of the evidence". — Ecohealth Vol 11: 619-632. [Crossref]
43. Grad Y.H., Kirkcaldy R.D., Trees D., Dordel J., Harris S.R., Goldstein E., Weinstock H., Parkhill J., Hanage W.P., Bentley S., Lipsitch M. (2014). "Genomic epidemiology of Neisseria gonorrhoeae with reduced susceptibility to cefixime in the USA: a retrospective observational study". — Lancet Infect. Dis. Vol 14: 220-226. [Crossref]
44. Greene C.E. (2012). Infectious diseases of the dog and cat, 4th edn.Elsevier/Saunders, St. Louis, MO.
45. Grenfell B.T., Pybus O.G., Gog J.R., Wood J.L.N., Daly J.M., Mumford J.A., Holmes E.C. (2004). "Unifying the epidemiological and evolutionary dynamics of pathogens". — Science Vol 303: 327-332. [Crossref]
46. Hall M.D., Woolhouse M.E.J., Rambaut A. (2016). "Using genomics data to reconstruct transmission trees during disease outbreaks". — Rev. Sci. Technol. Vol 35: 287-296. [Crossref]
47. Hall M., Woolhouse M., Rambaut A. (2015). "Epidemic reconstruction in a phylogenetics framework: transmission trees as partitions of the node set". — PLoS Comput. Biol. Vol 11: e1004613. [Crossref]
48. Hoffmann C., Stockhausen M., Merkel K., Calvignac-Spencer S., Leendertz F.H. (2016). "Assessing the feasibility of fly based surveillance of wildlife infectious diseases". — Sci. Rep. Vol 6: 37952.
49. Jombart T., Eggo R.M., Dodd P.J., Balloux F. (2011). "Reconstructing disease outbreaks from genetic data: a graph approach". — Heredity Vol 106: 383-390. [Crossref]
50. Kao R.R., Haydon D.T., Lycett S.J., Murcia P.R. (2014). "Supersize me: how whole-genome sequencing and big data are transforming epidemiology". — Trends Microbiol. Vol 22: 282-291. [Crossref]
51. Keeling M.J., Eames K.T.D. (2005). "Networks and epidemic models". — J. Roy. Soc. Interface Vol 2: 295-307. [Crossref]
52. Keeling M.J., Rohani P. (2011). Modeling infectious diseases in humans and animals. — Princeton University Press, Princeton, NJ.
53. Klinkenberg D., Backer J.A., Didelot X., Colijn C., Wallinga J. (2017). "Simultaneous inference of phylogenetic and transmission trees in infectious disease outbreaks". — PLoS Comput. Biol. Vol 13: e1005495. [Crossref]
54. Lee J.S., Ruell E.W., Boydston E.E., Lyren L.M., Alonso R.S., Troyer J.L., Crooks K.R., Vandewoude S. (2012). "Gene flow and pathogen transmission among bobcats (Lynx rufus) in a fragmented urban landscape". — Mol. Ecol. Vol 21: 1617-1631. [Crossref]
55. Leigh Brown A.J., Lycett S.J., Weinert L., Hughes G.J., Fearnhill E., Dunn D.T. & UK HIV Drug Resistance Collaboration (2011). "Transmission network parameters estimated from HIV sequences for a nationwide epidemic". — J. Infect. Dis. Vol 204: 1463-1469. [Crossref]
56. Lembo T., Hampson K., Haydon D.T., Craft M., Dobson A., Dushoff J., Ernest E., Hoare R., Kaare M., Mlengeya T., Mentzel C., Cleaveland S. (2008). "Exploring reservoir dynamics: a case study of rabies in the Serengeti ecosystem". — J. Appl. Ecol. Vol 45: 1246-1257. [Crossref]
57. Lemey P., Rambaut A., Bedford T., Faria N., Bielejec F., Baele G., Russell C.A., Smith D.J., Pybus O.G., Brockmann D., Suchard M.A. (2014). "Unifying viral genetics and human transportation data to predict the global transmission dynamics of human influenza H3N2". — PLoS Pathog. Vol 10: e1003932. [Crossref]
58. Lemey P., Rambaut A., Drummond A.J., Suchard M.A. (2009). "Bayesian phylogeography finds its roots". — PLoS Comput. Biol. Vol 5: e1000520. [Crossref]
59. Lemey P., Rambaut A., Welch J.J., Suchard M.A. (2010). "Phylogeography takes a relaxed random walk in continuous space and time". — Mol. Biol. Evol. Vol 27: 1877-1885. [Crossref]
60. Leventhal G.E., Kouyos R., Stadler T., von Wyl V., Yerly S., Böni J., Cellerai C., Klimkait T., Günthard H.F., Bonhoeffer S. (2012). "Inferring epidemic contact structure from phylogenetic trees". — PLoS Comput. Biol. Vol 8: e1002413. [Crossref]
61. Levins R. (1966). "The strategy of model building in population biology". — Am. Sci. Vol 54: 421-431.
62. Lewis F., Hughes G.J., Rambaut A., Pozniak A., Leigh Brown A.J. (2008). "Episodic sexual transmission of HIV revealed by molecular phylodynamics". — PLoS Med. Vol 5: e50. [Crossref]
63. Lloyd-Smith J.O., George D., Pepin K.M., Pitzer V.E., Pulliam J.R.C., Dobson A.P., Hudson P.J., Grenfell B.T. (2009). "Epidemic dynamics at the human-animal interface". — Science Vol 326: 1362-1367. [Crossref]
64. Lloyd-Smith J.O., Schreiber S.J., Kopp P.E., Getz W.M. (2005). "Superspreading and the effect of individual variation on disease emergence". — Nature Vol 438: 355-359. [Crossref]
65. MacIntosh A.J.J., Jacobs A., Garcia C., Shimizu K., Mouri K., Huffman M.A., Hernandez A.D. (2012). "Monkeys in the middle: parasite transmission through the social network of a wild primate". — PLoS One Vol 7: e51144. [Crossref]
66. Marquetoux N., Heuer C., Wilson P., Ridler A., Stevenson M. (2016). "Merging DNA typing and network analysis to assess the transmission of paratuberculosis between farms". — Prev. Vet. Med. Vol 134: 113-121. [Crossref]
67. Martínez-López B., Perez A.M., Sánchez-Vizcaíno J.M. (2009). "Social network analysis. Review of general concepts and use in preventive veterinary medicine". — Transbound. Emerg. Dis. Vol 56: 109-120. [Crossref]
68. McCloskey R.M., Liang R.H., Poon A.F.Y. (2016). "Reconstructing contact network parameters from viral phylogenies". — Virus Evol. Vol 2: vew029. [Crossref]
69. Metzker M.L., Mindell D.P., Liu X.-M., Ptak R.G., Gibbs R.A., Hillis D.M. (2002). "Molecular evidence of HIV-1 transmission in a criminal case". — Proc. Natl. Acad. Sci. USA Vol 99: 14292-14297. [Crossref]
70. Meyers L.A. (2007). "Contact network epidemiology: bond percolation applied to infectious disease prediction and control". — Bull. Am. Math. Soc. Vol 44: 63-87. [Crossref]
71. Minot S., Bryson A., Chehoud C., Wu G.D., Lewis J.D., Bushman F.D. (2013). "Rapid evolution of the human gut virome". — Proc. Natl. Acad. Sci. USA Vol 110: 12450-12455. [Crossref]
72. Mollentze N., Nel L.H., Townsend S., le Roux K., Hampson K., Haydon D.T., Soubeyrand S. (2014). "A Bayesian approach for inferring the dynamics of partially observed endemic infectious diseases from space-time-genetic data". — Proc. Roy. Soc. Lond. B: Biol. Sci. Vol 281: 20133251. [Crossref]
73. Natoli E., Say L., Cafazzo S., Bonanni R., Schmid M., Pontier D. (2005). "Bold attitude makes male urban feral domestic cats more vulnerable to feline immunodeficiency virus". — Neurosci. Biobehav. Rev. Vol 29: 151-157. [Crossref]
74. Numminen E., Chewapreecha C., Sirén J., Turner C., Turner P., Bentley S.D., Corander J. (2014). "Two-phase importance sampling for inference about transmission trees". — Proc. Roy. Soc. Lond. B: Biol. Sci. Vol 281: 20141324. [Crossref]
75. Nunn C.L., Jordán F., McCabe C.M., Verdolin J.L., Fewell J.H. (2015). "Infectious disease and group size: more than just a numbers game". — Philos. Trans. Roy. Soc. Lond. B: Biol. Sci. 370.
76. Pellis L., Ball F., Bansal S., Eames K., House T., Isham V., Trapman P. (2015). "Eight challenges for network epidemic models". — Epidemics Vol 10: 58-62. [Crossref]
77. Perkins S.E., Cagnacci F., Stradiotto A., Arnoldi D., Hudson P.J. (2009). "Comparison of social networks derived from ecological data: implications for inferring infectious disease dynamics". — J. Anim. Ecol. Vol 78: 1015-1022. [Crossref]
78. Picard C., Dallot S., Brunker K., Berthier K., Roumagnac P., Soubeyrand S., Jacquot E., Thébaud G. (2017). "Exploiting genetic information to trace plant virus dispersal in landscapes". — Annu. Rev. Phytopathol. Vol 55: 139-160. [Crossref]
79. Pluciński M.M., Starfield R., Almeida R.P.P. (2011). "Inferring social network structure from bacterial sequence data". — PLoS One Vol 6: e22685. [Crossref]
80. Pope L.C., Butlin R.K., Wilson G.J., Woodroffe R., Erven K., Conyers C.M., Franklin T., Delahay R.J., Cheeseman C.L., Burke T. (2007). "Genetic evidence that culling increases badger movement: implications for the spread of bovine tuberculosis". — Mol. Ecol. Vol 16: 4919-4929. [Crossref]
81. Porphyre T., Stevenson M., Jackson R., McKenzie J. (2008). "Influence of contact heterogeneity on TB reproduction ratio R0 in a free-living brushtail possum Trichosurus vulpecula population". — Vet. Res. Vol 39: 31. [Crossref]
82. Rasmussen A.L. (2015). "Probing the viromic frontiers". — MBio Vol 6: e01767-15. [Crossref]
83. Ray B., Ghedin E., Chunara R. (2016). "Network inference from multimodal data: a review of approaches from infectious disease transmission". — J. Biomed. Inform. Vol 64: 44-54. [Crossref]
84. Reynolds J.J.H., Hirsch B.T., Gehrt S.D., Craft M.E. (2015). "Raccoon contact networks predict seasonal susceptibility to rabies outbreaks and limitations of vaccination". — J. Anim. Ecol. Vol 84: 1720-1731. [Crossref]
85. Robert K., Garant D., Pelletier F. (2012). "Keep in touch: does spatial overlap correlate with contact rate frequency?". — J. Wildl. Manage. Vol 76: 1670-1675. [Crossref]
86. Robinson K., Fyson N., Cohen T., Fraser C., Colijn C. (2013). "How the dynamics and structure of sexual contact networks shape pathogen phylogenies". — PLoS Comput. Biol. Vol 9: e1003105.
87. Romano C.M., de Carvalho-Mello I.M.V.G., Jamal L.F., de Melo F.L., Iamarino A., Motoki M., Pinho J.R.R., Holmes E.C., de Andrade Zanotto P.M. & VGDN Consortium (2010). "Social networks shape the transmission dynamics of hepatitis C virus". — PLoS One Vol 5: e11170.
88. Rushmore J., Caillaud D., Hall R.J., Stumpf R.M., Meyers L.A., Altizer S. (2014). "Network-based vaccination improves prospects for disease control in wild chimpanzees". — J. Roy. Soc. Interface Vol 11: 20140349.
89. Rushmore J., Caillaud D., Matamba L., Stumpf R.M., Borgatti S.P., Altizer S. (2013). "Social network analysis of wild chimpanzees provides insights for predicting infectious disease risk". — J. Anim. Ecol. Vol 82: 976-986. [Crossref]
90. Sah P., Leu S.T., Cross P.C., Hudson P.J., Bansal S. (2017). "Unraveling the disease consequences and mechanisms of modular structure in animal social networks". — Proc. Natl. Acad. Sci. USA Vol 114: 4165-4170. [Crossref]
91. Sharp P.M., Hahn B.H. (2010). "The evolution of HIV-1 and the origin of AIDS". — Philos. Trans. Roy. Soc. Lond. B: Biol. Sci. Vol 365: 2487-2494. [Crossref]
92. Silk M.J., Croft D.P., Delahay R.J., Hodgson D.J., Weber N., Boots M., McDonald R.A. (2017). "The application of statistical network models in disease research". — Methods Ecol. Evol. Vol 8: 1026-1041. [Crossref]
93. Sintchenko V., Holmes E.C. (2015). "The role of pathogen genomics in assessing disease transmission". — Br. Med. J. Vol 350: h1314. [Crossref]
94. Smiley Evans T., Gilardi K.V.K., Barry P.A., Ssebide B.J., Kinani J.F., Nizeyimana F., Noheri J.B., Byarugaba D.K., Mudakikwa A., Cranfield M.R., Mazet J.A.K., Johnson C.K. (2016). "Detection of viruses using discarded plants from wild mountain gorillas and golden monkeys". — Am. J. Primatol. Vol 78: 1222-1234. [Crossref]
95. Springer A., Mellmann A., Fichtel C., Kappeler P.M. (2016). "Social structure and Escherichia coli sharing in a group-living wild primate, Verreaux’s sifaka". — BMC Ecol. Vol 16: 6. [Crossref]
96. Streicker D.G., Winternitz J.C., Satterfield D.A., Condori-Condori R.E., Broos A., Tello C., Recuenco S., Velasco-Villa A., Altizer S., Valderrama W. (2016). "Host-pathogen evolutionary signatures reveal dynamics and future invasions of vampire bat rabies". — Proc. Natl. Acad. Sci. USA Vol 113: 10926-10931. [Crossref]
97. VanderWaal K.L., Atwill E.R., Isbell L.A., McCowan B. (2014). "Linking social and pathogen transmission networks using microbial genetics in giraffe (Giraffa camelopardalis)". — J. Anim. Ecol. Vol 83: 406-414. [Crossref]
98. VanderWaal K.L., Ezenwa V.O. (2016). "Heterogeneity in pathogen transmission: mechanisms and methodology". — Funct. Ecol. Vol 30: 1606-1622. [Crossref]
99. Vasylyeva T.I., Friedman S.R., Paraskevis D., Magiorkinis G. (2016). "Integrating molecular epidemiology and social network analysis to study infectious diseases: towards a socio-molecular era for public health". — Infect. Genet. Evol. Vol 46: 248-255. [Crossref]
100. Villaseñor-Sierra A., Quiñonez-Alvarado M.G., Caballero-Hoyos J.R. (2007). "Interpersonal relationships and group A Streptococcus spread in a Mexican day-care center". — Salud Publica Mex. Vol 49: 323-329. [Crossref]
101. Welch D. (2011). "Is network clustering detectable in transmission trees?". — Viruses Vol 3: 659-676. [Crossref]
102. Welch D., Bansal S., Hunter D.R. (2011). "Statistical inference to advance network models in epidemiology". — Epidemics Vol 3: 38-45. [Crossref]
103. Wheeler D.C., Waller L.A., Biek R. (2010). "Spatial analysis of feline immunodeficiency virus infection in cougars". — Spat. Spatiotemporal Epidemiol. Vol 1: 151-161. [Crossref]
104. White L.A., Forester J.D., Craft M.E. (2017). "Using contact networks to explore mechanisms of parasite transmission in wildlife". — Biol. Rev. Camb. Philos. Soc. Vol 92: 389-409. [Crossref]
105. Worby C.J., Lipsitch M., Hanage W.P. (2014). "Within-host bacterial diversity hinders accurate reconstruction of transmission networks from genomic distance data". — PLoS Comput. Biol. Vol 10: e1003549. [Crossref]
106. Wylie J.L., Cabral T., Jolly A.M. (2005). "Identification of networks of sexually transmitted infection: a molecular, geographic, and social network analysis". — J. Infect. Dis. Vol 191: 899-906. [Crossref]
107. Ypma R.J.F., Bataille A.M.A., Stegeman A., Koch G., Wallinga J., van Ballegooijen W.M. (2012). "Unravelling transmission trees of infectious diseases by combining genetic and epidemiological data". — Proc. Roy. Soc. Lond. B: Biol. Sci. Vol 279: 444-450. [Crossref]
108. Ypma R.J.F., Jonges M., Bataille A., Stegeman A., Koch G., van Boven M., Koopmans M., van Ballegooijen W.M., Wallinga J. (2013a). "Genetic data provide evidence for wind-mediated transmission of highly pathogenic avian influenza". — J. Infect. Dis. Vol 207: 730-735. [Crossref]
109. Ypma R.J.F., van Ballegooijen W.M., Wallinga J. (2013b). "Relating phylogenetic trees to transmission trees of infectious disease outbreaks". — Genetics Vol 195: 1055-1062. [Crossref]
Submit comment
Close
Comment moderation successfully completed

Sign-in

Can't access your account?
  • Tools

  • Add to Favorites
  • Printable version
  • Email this page
  • Subscribe to ToC alert
  • Recommend to your library

    You must fill out fields marked with: *

    Librarian details
    Your details
    Why are you recommending this title?
    Select reason:
     
    Brill — Recommend this title to your library
  • Export citations
  • Key

  • Full access
  • Open Access
  • Partial/No accessInformation