Cookies Policy
X

This site uses cookies. By continuing to browse the site you are agreeing to our use of cookies.

I accept this policy

Find out more here

Diversity of endosymbiont bacteria associated with a non-filarial nematode group

No metrics data to plot.
The attempt to load metrics for this article has failed.
The attempt to plot a graph for these metrics has failed.
The full text of this article is not currently available.

Brill’s MyBook program is exclusively available on BrillOnline Books and Journals. Students and scholars affiliated with an institution that has purchased a Brill E-Book on the BrillOnline platform automatically have access to the MyBook option for the title(s) acquired by the Library. Brill MyBook is a print-on-demand paperback copy which is sold at a favorably uniform low price.

Access this article

+ Tax (if applicable)
Add to Favorites
You must be logged in to use this functionality

For more content, see Nematologica.

There is a significant knowledge gap with regard to non-filarial nematodes and their relationships, if any, with intracellular bacteria, with only sporadic reports in the literature. An intracellular bacteria Xiphinematobacter, belonging to subdivision 2 of the Verrucomicrobia, was previously reported in the ovaries of three species of the non-filarial Xiphinema americanum-group of nematodes. We explored the diversity of Xiphinematobacter in 22 populations of X. americanum sourced from six continents and conservatively have identified nine phylotypes, six of which have not previously been reported. A geographic basis to the phylotypes was noted with phylotypes A and B only found in Europe, whereas phylotypes F, G, H and I were mainly found in North America. Phylotypes C, D and E showed greater geographical variation. Sequences of Xiphinematobacter from this study help to inform the taxonomy of Verrucomicrobia such that the status and composition of Verrucomicrobia subdivision 2 potentially requires reflection.

Affiliations: 1: 1Institute of Biodiversity and Ecosystem Research, 2 Gagarin Street, 1113 Sofia, Bulgaria; 2: 2Instituto Biológico, PO 70, Campinas, SP 13001 970, Brazil; 3: 3Scotland’s Rural College (SRUC), Peter Wilson Building, Kings Buildings, West Mains Road, Edinburgh EH9 3JG, Scotland, UK; 4: 4Biomathematics and Statistics Scotland, Dundee DD2 5DA, Scotland, UK; 5: 5The James Hutton Institute, Dundee DD2 5DA, Scotland, UK

Loading

Full text loading...

/content/journals/10.1163/15685411-00002982
Loading

Data & Media loading...

1. Adams R.E. , Eichenmüller J.J. (1963). "A bacterial infection of Xiphinema americanum ". Phytopathology Vol 53, 745.
2. Baquiran J.-P. , Thater B. , Sedky S. , De Ley P. , Crowley D. , Orwin P.M. (2013). "Culture-independent investigation of the microbiome associated with the nematode Acrobeloides maximus ". PLoS ONE Vol 8, e67425.
3. Bordenstein S.R. , Fitch D.H.A. , Werren J.H. (2003). "Absence of Wolbachia in nonfilariid nematodes". Journal of Nematology Vol 35, 266-270.
4. Brown A.M.V. , Howe D.K. , Wasala S.K. , Peetz A.B. , Zasada I.A. , Denver D.R. (2015). "Comparative genomics of a plant-parasitic nematode endosymbiont suggest a role in nutritional symbiosis". Genome Biology and Evolution Vol 7, 2727-2746. http://dx.doi.org/10.1093/gbe/evv176
5. Brown D.J.F. , Boag B. (1988). "An examination of methods used to extract virus-vector nematodes (Nematoda: Longidoridae and Trichodoridae) from soil samples". Nematologia Mediterranea Vol 16, 93-99.
6. Cao Y. , Tian B. , Ji X. , Shang S. , Lu C. , Zhang K. (2015). "Associated bacteria of different life stages of Meloidogyne incognita using pyrosequencing-based analysis". Journal of Basic Microbiology Vol 55, 950-960. http://dx.doi.org/10.1002/jobm.201400816
7. Cheng X.Y. , Tian X.L. , Wang Y.S. , Lin R.M. , Mao Z.C. , Chen N.S. , Xie B.-Y. (2013). "Metagenomic analysis of the pinewood nematode microbiome reveals a symbiotic relationship critical for xenobiotics degradation". Scientific Reports Vol 3, 1869.
8. Clark E.L. , Karley A.J. , Hubbard S.F. (2010). "Insect endosymbionts: manipulators of insect herbivore trophic interactions?" Protoplasma Vol 244, 25-51. http://dx.doi.org/10.1007/s00709-010-0156-2
9. Clark E.L. , Daniell T.J. , Wishart J. , Hubbard S.F. , Karley A.J. (2012). "How conserved are the bacterial communities associated with aphids? A detailed assessment of the Brevicoryne brassicae (Hemiptera: Aphididae) using 16s rDNA". Environmental Entomology Vol 41, 1386-1397. http://dx.doi.org/10.1603/EN12152
10. Coomans A. , Vandekerckhove T.T.M. , Claeys M. (2000). "Transovarial transmission of symbionts in Xiphinema brevicollum (Nematoda: Longidoridae)". Nematology Vol 2, 443-449. http://dx.doi.org/10.1163/156854100509303
11. Dunfield K.E. , King G.M. (2004). "Molecular analysis of carbon monoxide-oxidizing bacteria associated with recent Hawaiian volcanic deposits". Applied and Environmental Microbiology Vol 70, 4242-4248. http://dx.doi.org/10.1128/AEM.70.7.4242-4248.2004
12. Endo B.Y. (1979). "Ultrastructure and distribution of an intracellular bacterium-like microorganism in tissues of larvae of the soybean cyst nematode Heterodera glycines ". Journal of Ultrastructure and Molecular Structure Research Vol 67, 1-14. http://dx.doi.org/10.1016/S0022-5320(79)80012-X
13. Fenn K. , Blaxter M. (2006). " Wolbachia genomes: revealing the biology of parasitism and mutualism". Trends in Parasitology Vol 22, 60-65. http://dx.doi.org/10.1016/j.pt.2005.12.012
14. Forst S. , Clarke D. (2001). "Bacteria-nematode symbiosis". In: Gaugler R. (Ed.). Entomopathogenic nematology. Wallingford, UK, CAB International, pp.  57-78.
15. Fuerst J.A. (2013). "The PVC superphylum: exceptions to the bacterial definition?" Antonie van Leeuwenhoek Journal of Microbiology Vol 104, 451-466. http://dx.doi.org/10.1007/s10482-013-9986-1
16. Gutiérrez-Gutiérrez C. , Cantalapiedra-Navarrete C. , Decraemer W. , Vovlas N. , Prior T. , Rius J.E.P. , Castillo P. (2012). "Phylogeny, diversity, and species delimitation in some species of the Xiphinema americanum-group complex (Nematoda: Longidoridae), as inferred from nuclear and mitochondrial DNA sequences and morphology". European Journal of Plant Pathology Vol 134, 561-597. http://dx.doi.org/10.1007/s10658-012-0039-9
17. Haegeman A. , Vanholme B. , Jacob J. , Vandekerckhove T.T.M. , Claeys M. , Borgonie G. , Gheysen G. (2009). "An endosymbiont bacterium in a plant-parasitic nematode: member of a new Wolbachia supergroup". International Journal for Parasitology Vol 39, 1045-1054. http://dx.doi.org/10.1016/j.ijpara.2009.01.006
18. Hagimori T. , Abe Y. , Date S. , Miura K. (2006). "The first finding of a Rickettsia bacterium associated with parthenogenesis induction among insects". Current Microbiology Vol 52, 97-101. http://dx.doi.org/10.1007/s00284-005-0092-0
19. Halbrendt J.M. , Brown D.J.F. (1992). "Morphometric evidence for three juvenile stages in some species of Xiphinema americanum sensu lato". Journal of Nematology Vol 24, 305-309.
20. Jacob M. , Soltwedel T. , Boetius A. , Ramette A. (2013). "Biogeography of deep-sea benthic bacteria at regional scale (LTER Hausgarten, Fram Strait, Arctic)". PLoS ONE Vol 8, e72779. http://dx.doi.org/10.1371/annotation/0a53f994-bfe2-45db-9dbb-97fdfea023c5
21. Janda J.M. , Abbott S.L. (2007). "16S rRNA gene sequencing for bacterial identification in the diagnostic laboratory: pluses, perils, and pitfalls". Journal of Clinical Microbiology Vol 45, 2761-2764. http://dx.doi.org/10.1128/JCM.01228-07
22. Katoh K. , Standley D.M. (2013). "MAFFT multiple sequence alignment software version 7: improvements in performance and usability". Molecular Biology and Evolution Vol 30, 772-780. http://dx.doi.org/10.1093/molbev/mst010
23. Keller A. , Förster F. , Müller T. , Dandekar T. , Schultz J. , Wolf M. (2010). "Including RNA secondary structures improves accuracy and robustness in reconstruction of phylogenetic trees". Biology Direct Vol 5, 4. http://dx.doi.org/10.1186/1745-6150-5-4
24. Kielak A. , Rodrigues J.L.M. , Kuramae E.E. , Chain P.S.G. , van Veen J.A. , Kowalchuk G.A. (2010). "Phylogenetic and metagenomic analysis of Verrucomicrobia in former agricultural grassland soil". FEMS Microbiology and Ecology Vol 71, 23-33. http://dx.doi.org/10.1111/j.1574-6941.2009.00785.x
25. Lamb T.J. , Le Goff L. , Kurniawan A. , Guiliano D.B. , Fenn K. , Blaxter M.L. , Read A.F. , Allen J.E. (2004). "Most of the response elicited against Wolbachia surface protein in filarial nematode infection is due to the infective larval stage". Journal of Infectious Diseases Vol 189, 120-127. http://dx.doi.org/10.1086/380490
26. Lamberti F. , Molinari S. , Moens M. , Brown D.J.F. (2000). "The Xiphinema americanum group. I. Putative species, their geographical occurrence and distribution, and regional polytomous identification keys for the group". Russian Journal of Nematology Vol 8, 65-84.
27. Lazarova S.S. , Malloch G. , Oliveira C.M.G. , Hübschen J. , Neilson R. (2006). "Ribosomal and mitochondrial DNA analyses of Xiphinema americanum-group populations". Journal of Nematology Vol 38, 404-410.
28. Luc M. , Coomans A. , Loof P.A.A. , Baujard P. (1998). "The Xiphinema americanum group (Nematoda: Longidoridae). 2. Observations on Xiphinema brevicollum Lordello and da Costa, 1961 and comments on the group". Fundamental and Applied Nematology Vol 21, 475-490.
29. Morran L.T. , Schmidt O.G. , Gelarden I.A. , Parrish R.C. II , Lively C.M. (2011). "Running with the red queen: host-parasite coevolution selects for biparental sex". Science Vol 333, 216-218. http://dx.doi.org/10.1126/science.1206360
30. Neilson R. , Ye W. , Oliveira C.M.G. , Hübschen J. , Robbins R.T. , Brown D.J.F. , Szalanski A.L. (2004). "Phylogenetic relationships of selected species of Longidoridae (Nematoda: Longidoridae) from North America inferred from 18S rDNA gene sequence data". Helminthologia Vol 41, 209-215.
31. Noel G.R. , Atibalentja N. (2006). "‘Candidatus Paenicardinium endonii’, an endosymbiont of the plant-parasitic nematode Heterodera glycines (Nemata: Tylenchida), affiliated to the phylum Bacteroidetes". International Journal of Systematic and Evolutionary Microbiology Vol 56, 1697-1702. http://dx.doi.org/10.1099/ijs.0.64234-0
32. Sangwan P. , Chen X. , Hugenholtz P. , Janssen P.H. (2004). " Chthoniobacter flavus gen. nov., sp. nov., the first pure-culture representative of subdivision two, Spartobacteria classis nov., of the phylum Verrucomicrobia". Applied and Environmental Microbiology Vol 70, 5875-5881. http://dx.doi.org/10.1128/AEM.70.10.5875-5881.2004
33. Schlesner H. , Jenkins C. , Staley J.T. (2006). "The phylum Verrucomicrobia; a phylogenetically heterogeneous bacterial group". Prokaryotes Vol 7, 881-896. http://dx.doi.org/10.1007/0-387-30747-8_37
34. Shepherd A.M. , Clark S.A. , Kempton A. (1973). "Intracellular microorganism associated with tissues of Heterodera spp." Nematologica Vol 19, 31-34. http://dx.doi.org/10.1163/187529273X00060
35. Stamatakis A. (2006). "RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models". Bioinformatics Vol 22, 2688-2690. http://dx.doi.org/10.1093/bioinformatics/btl446
36. Stanton J. , Hugall A. , Moritz C. (1997). "Nucleotide polymorphisms and an improved PCR-based mtDNA diagnostic for parthenogenetic root-knot nematodes (Meloidogyne spp.)". Fundamental and Applied Nematology Vol 20, 261-268.
37. Taylor M. , Mediannikov O. , Raoult D. , Greub G. (2012). "Endosymbiotic bacteria associated with nematodes, ticks and amoebae". FEMS Immunology Medical Microbiology Vol 64, 21-31. http://dx.doi.org/10.1111/j.1574-695X.2011.00916.x
38. Telford M. , Wise M. , Gowri-Shankar V. (2005). "Consideration of RNA secondary structure significantly improves likelihood-based estimates of phylogeny: examples from the bilateria". Molecular Biology and Evolution Vol 22, 1129-1136. http://dx.doi.org/10.1093/molbev/msi099
39. Tian X.-J. , Wu X.-Q. , Xiang Y. , Fang X. , Ye J.-R. (2015). "The effect of endobacteria on the development and virulence of the pine wood nematode, Bursaphelenchus xylophilus ". Nematology Vol 17, 581-589. http://dx.doi.org/10.1163/15685411-00002892
40. Vandekerckhove T.T.M. , Willems A. , Gillis M. , Coomans A. (2000). "Occurrence of novel Verrucomicrobial species, endosymbiont and associated with parthenogenesis in Xiphinema americanum-group species (Nematoda: Longidoridae)". International Journal of Systematic and Evolutionary Microbiology Vol 50, 2197-2205. http://dx.doi.org/10.1099/00207713-50-6-2197
41. Vandekerckhove T.T.M. , Coomans A. , Cornelis K. , Baert P. , Gillis M. (2002). "Use of the Verrucomicrobia-specific probe EUB338-III and fluorescent in situ hybridisation for detection of “Candidatus Xiphinematobacter” cells in nematode hosts". Applied and Environmental Microbiology Vol 68, 3121-3125. http://dx.doi.org/10.1128/AEM.68.6.3121-3125.2002
42. Vicente C.S.L. , Nascimento F. , Espada M. , Barbosa P. , Mota M. , Glick B.R. , Oliveira S. (2012). "Characterization of bacteria associated with pinewood nematode Bursaphelenchus xylophilus ". PLoS ONE Vol 7, e46661. http://dx.doi.org/10.1371/journal.pone.0046661
43. Wagner M. , Horn M. (2006). "The Plantomycetes, Verrucomicrobia, Chlamydiae and sister phyla comprise a superphylum with biotechnological and medical relevance". Current Opinion in Biotechnology Vol 17, 241-249. http://dx.doi.org/10.1016/j.copbio.2006.05.005
44. Walsh J.A. , Lee D.L. , Shepherd A.M. (1983a). "The distribution and effect of intracellular rickettsia-like microorganisms infecting adult males of the potato cyst-nematode Globodera rostochiensis ". Nematologica Vol 29, 227-239. http://dx.doi.org/10.1163/187529283X00474
45. Walsh J.A. , Lee D.L. , Shepherd A.M. (1983b). "The distribution and effect of intracellular rickettsia-like microorganisms infecting 2nd-stage juveniles of the potato cyst-nematode Globodera rostochiensis ". Journal of Zoology Vol 199, 395-419. http://dx.doi.org/10.1111/j.1469-7998.1983.tb02104.x
46. Wu X.Q. , Yuan W.M. , Tian X.J. , Fan B. , Fang X. , Ye J.R. , Ding X.L. (2013). "Specific and functional diversity of endophytic bacteria from pine wood nematode Bursaphelenchus xylophilus with different virulence". International Journal of Biological Sciences Vol 9, 34-44. http://dx.doi.org/10.7150/ijbs.5071
http://brill.metastore.ingenta.com/content/journals/10.1163/15685411-00002982
Loading

Article metrics loading...

/content/journals/10.1163/15685411-00002982
2016-05-30
2017-10-19

Sign-in

Can't access your account?
  • Tools

  • Add to Favorites
  • Printable version
  • Email this page
  • Subscribe to ToC alert
  • Get permissions
  • Recommend to your library

    You must fill out fields marked with: *

    Librarian details
    Your details
    Why are you recommending this title?
    Select reason:
     
    Nematology — Recommend this title to your library
  • Export citations
  • Key

  • Full access
  • Open Access
  • Partial/No accessInformation