Cookies Policy
X

This site uses cookies. By continuing to browse the site you are agreeing to our use of cookies.

I accept this policy

Find out more here

Radopholoides japonicus n. sp. (Nematoda: Pratylenchidae) found in rhizosphere soil associated with Podocarpus macrophyllus from Japan

No metrics data to plot.
The attempt to load metrics for this article has failed.
The attempt to plot a graph for these metrics has failed.
The full text of this article is not currently available.

Brill’s MyBook program is exclusively available on BrillOnline Books and Journals. Students and scholars affiliated with an institution that has purchased a Brill E-Book on the BrillOnline platform automatically have access to the MyBook option for the title(s) acquired by the Library. Brill MyBook is a print-on-demand paperback copy which is sold at a favorably uniform low price.

Access this article

+ Tax (if applicable)
Add to Favorites
You must be logged in to use this functionality

image of Nematology
For more content, see Nematologica.

Radopholoides japonicus n. sp. isolated from rhizospheric soil samples associated with Podocarpus macrophyllus imported from Japan into Ningbo Port of China is described and illustrated. It is characterised by four lateral lines, lip region low, convex with three annuli. Stylet 16.5-18.5 μm long with anteriorly sloping rounded knobs. Excretory pore at the level of pharyngo-intestinal junction. Vulva posteriorly located, vulval lips not protruding, spermatheca squarish. Post-vulval uterine sac 35-44 μm long. Tail conoid with broadly rounded terminus, phasmid 6-8 annuli posterior to anus. Among five species of genus Radopholoides, the new species is close to R. antoni but can be differentiated from it by lip and tail morphology. This is the first Radopholoides species that provided detailed morphological and molecular characterisation. Maximum Likelihood analysis using the Shimodaira-Hasegawa test for the validity of Radopholoides was performed and showed the validity of the genus using the partial 18S and D2-D3 expansion segments of 28S.

Affiliations: 1: 1Department of Plant Pathology, Nanjing Agricultural University, Nanjing 210095, P.R. China ; 2: 2Technical Centre, Ningbo Entry-Exit Inspection and Quarantine Bureau, 9 Mayuan Road, Ningbo 315012, Zhejiang, P.R. China ; 3: 3Institute for Sustainable Agriculture (IAS), Spanish National Research Council (CSIC), Campus de Excelencia Internacional Agroalimentario, ceiA3, Avenida Menéndez Pidal s/n, 14004 Córdoba, Spain

*Corresponding author, e-mail: lihm@njau.edu.cn
Loading

Full text loading...

/content/journals/10.1163/15685411-00003109
Loading

Data & Media loading...

1. Andrássy I. (1976). Evolution as a basis for the systematization of nematodes. London, UK, Pitman Publishing.
2. Andrássy I. (2007). Free-living nematodes of Hungary II (Nematoda errantia). Pedozoologica Hungarica no. 4 (Series Editors: Csuzdi C., Mahunka S.). Budapest, Hungary, Hungarian National History Museum and Systematic Zoology Research Group of the Hungarian Academy of Sciences.
3. Cobb N.A. (1893). "Nematodes, mostly Australian and Fijian". In: Macleay memorial volume. Kingsford, NSW, Australia, Linnean Society of New South Wales, pp.  252-308.
4. Colbran R.C. (1970). "Studies of plant and soil nematodes. 15. Eleven new species of Radopholus Thorne and a new species of Radopholoides De Guiran (Nematoda: Tylenchoidea) from Australia". Queensland Journal of Agricultural and Animal Sciences Vol 27, 437-460.
5. Darriba D., Taboada G.L., Doallo R., Posada D. (2012). "jModelTest 2: more models, new heuristics and parallel computing". Nature Methods Vol 9, 772. DOI: 10.1038/nmeth.2109 [Crossref]
6. De Guiran G. (1967). "Description de Radopholoides litoralis n. g., n. sp. (Nematoda: Pratylenchinae)". Nematologica Vol 13, 231-234. DOI: 10.1163/187529267X00085 [Crossref]
7. De Ley P., Félix M.A., Frisse L.M., Nadler S.A., Sternberg P.W., Thomas W.K. (1999). "Molecular and morphological characterisation of two reproductively isolated species with mirror-image anatomy (Nematoda: Cephalobidae)". Nematology Vol 1, 591-612. DOI: 10.1163/156854199508559 [Crossref]
8. Ferris V.R., Ferris J.M., Faghihi J. (1993). "Variation in spacer ribosomal DNA in some cyst forming species of plant parasitic nematodes". Fundamental and Applied Nematology Vol 16, 177-184.
9. Geraert E. (2013). The Pratylenchidae of the world: identification of the family Pratylenchidae (Nematoda: Tylenchida). Ghent, Belgium, Academia Press.
10. Holterman M., Van der Wurff A., van den Elsen S., van Megen H. (2006). "Phylum-wide analysis of SSU rDNA reveals deep phylogenetic relationships among nematodes and accelerated evolution toward crown clades". Molecular Biology and Evolution Vol 13, 1792-1800. DOI: 10.1093/molbev/msl044 [Crossref]
11. Katoh K., Standley D.M. (2013). "MAFFT multiple sequence alignment software version 7: improvements in performance and usability". Molecular Biology and Evolution Vol 30, 772-780. DOI: 10.1093/molbev/mst010 [Crossref]
12. Larget B., Simon D.L. (1999). "Markov chain Monte Carlo algorithms for the Bayesian analysis of phylogenetic trees". Molecular Biology and Evolution Vol 16, 750-759. DOI: 10.1093/oxfordjournals.molbev.a026160 [Crossref]
13. Larsson A. (2014). "AliView: a fast and lightweight alignment viewer and editor for large datasets". Bioinformatics Vol 30, 3276-3278. DOI: 10.1093/bioinformatics/btu531 [Crossref]
14. Li H., Trinh P.Q., Waeyenberge L., Moens M. (2008). "Bursaphelenchus chengi sp. n. (Nematoda: Parasitaphelenchidae) isolated at Nanjing, China, in packaging wood from Taiwan". Nematology Vol 10, 335-346. DOI: 10.1163/156854108783900294 [Crossref]
15. Luc M. (1987). "A reappraisal of Tylenchina (Nemata). 7. The family Pratylenchidae Thorne, 1949". Revue de Nématologie Vol 10, 203-218.
16. Mizukubo T. (1989). "Description of Radopholus sanoi n. sp. from Kyushu, Japan". Japanese Journal of Nematology Vol 18, 39-44. DOI: 10.14855/jjn1972.18.39
17. Palomares-Rius J.E., Cantalapiedra-Navarrete C., Archidona-Yuste A., Castillo P. (2016). "Hoplotylus femina s’Jacob, 1960 (Nematoda: Pratylenchidae) from Spain with molecular phylogenetic relationships inferred by D2-D3 expansion fragments of 28S and the partial 18S rRNA gene sequences". Nematology Vol 5, 559-569. DOI: 10.1163/15685411-0000297 [Crossref]
18. Ronquist F., Huelsenbeck J.P. (2003). "MrBayes 3: Bayesian phylogenetic inference under mixed models". Bioinformatics Vol 19, 1572-1574. DOI: 10.1093/bioinformatics/btg180 [Crossref]
19. Ryss A.Y. (2003). "Taxonomy, evolution and phylogeny of the genus Radopholus (didelphic species) according to morphological data, with a key to species (Nematoda: Tylenchida)". Zoosystematica Rossica Vol 11, 243-256.
20. Seinhorst J.W. (1959). "A rapid method for the transfer of nematodes from fixative to anhydrous glycerin". Nematologica Vol 4, 67-69. DOI: 10.1163/187529259X00381 [Crossref]
21. Shimodaira H., Hasegawa M. (2001). "CONSEL: for assessing the confidence of phylogenetic tree selection". Bioinformatics Vol 17, 1246-1247. DOI: 10.1093/bioinformatics/17.12.1246 [Crossref]
22. Siddiqi M.R. (1986). Tylenchida parasites of plants and insects. Farnham Royal, UK, Commonwealth Agricultural Bureaux.
23. Siddiqi M.R. (2000). Tylenchida parasites of plants and insects, 2nd edition. Wallingford, UK, CABI Publishing. [Crossref]
24. Siddiqi M.R., Hahn M.L. (1995). "Radopholus bridgei sp. n. (Tylenchida: Pratylenchidae) from Indonesia and its differentiation by morphological and molecular characters". AfroAsian Journal of Nematology Vol 5, 38-43.
25. Silvestro D., Michalak I. (2012). "RaxmlGUI: a graphical front-end for RAxML". Organisms Diversity & Evolution Vol 12, 335-337. DOI: 10.1007/s13127-011-0056-0 [Crossref]
26. s’Jacob J.J. (1960). "Hoplotylus femina n. g., n. sp. (Pratylenchinae: Tylenchida) associated with ornamental trees". Nematologica Vol 4, 317-321. DOI: 10.1163/187529259X00525 [Crossref]
27. Stamatakis A. (2006). "RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models". Bioinformatics Vol 22, 2688-2690. DOI: 10.1093/bioinformatics/btl446 [Crossref]
28. Stöver B.C., Müller K.F. (2010). "TreeGraph 2: combining and visualizing evidence from different phylogenetic analyses". BMC Bioinformatics Vol 11, 7. DOI: 10.1186/1471-2105-11-7 [Crossref]
29. Sturhan D. (2008). "Review of the genera Hoplotylus and Radopholoides (Tylenchida, Pratylenchidae)". Journal of Nematode Morphology and Systematics Vol 11, 159-166.
30. Thorne G. (1949). "On the classification of the Tylenchida, new order (Nematoda, Phasmidia)". Proceedings of the Helminthological Society of Washington Vol 16, 37-73.
31. Trinh P.Q., Nguyen C.N., Waeyenberge L., Subbotin S.A., Karssen G., Moens M. (2004). "Radopholus arabocoffeae sp. n. (Nematoda: Pratylenchidae), a nematode pathogenic to Coffea arabica in Vietnam, and additional data on R. duriophilus". Nematology Vol 6, 681-693. DOI: 10.1163/1568541042843577 [Crossref]
32. Van den Berg E., Heyns J., Tiedt L.R. (2000). "Ogma formosum sp. n. and Radopholus antoni sp. n., with notes on Criconema sirgeli Van den Berg & Meyer, 1987 (Nemata: Tylenchina) from South Africa". Journal of Nematode Morphology and Systematics Vol 3, 49-61.
33. Vrain T.C. (1993). "Restriction fragment length polymorphism separates species of the Xiphinema americanum group". Journal of Nematology Vol 25, 361-364.
34. Ye W., Giblin-Davis R.M., Braasch H., Morris K., Thomas W.K. (2007). "Phylogenetic relationships among Bursaphelenchus species (Nematoda: Parasitaphelenchidae) inferred from nuclear ribosomal and mitochondrial DNA sequence data". Molecular Phylogenetics and Evolution Vol 43, 1185-1197. DOI: 10.1016/j.ympev.2007.02.006 [Crossref]
http://brill.metastore.ingenta.com/content/journals/10.1163/15685411-00003109
Loading

Article metrics loading...

/content/journals/10.1163/15685411-00003109
2017-10-18
2017-11-24

Sign-in

Can't access your account?
  • Tools

  • Add to Favorites
  • Printable version
  • Email this page
  • Subscribe to ToC alert
  • Get permissions
  • Recommend to your library

    You must fill out fields marked with: *

    Librarian details
    Your details
    Why are you recommending this title?
    Select reason:
     
    Nematology — Recommend this title to your library
  • Export citations
  • Key

  • Full access
  • Open Access
  • Partial/No accessInformation