Cookies Policy
X

This site uses cookies. By continuing to browse the site you are agreeing to our use of cookies.

I accept this policy

Find out more here

Quantitative trait loci mapping of Meloidogyne incognita and M. hapla resistance in a recombinant inbred line population of soybean

No metrics data to plot.
The attempt to load metrics for this article has failed.
The attempt to plot a graph for these metrics has failed.
The full text of this article is not currently available.

Brill’s MyBook program is exclusively available on BrillOnline Books and Journals. Students and scholars affiliated with an institution that has purchased a Brill E-Book on the BrillOnline platform automatically have access to the MyBook option for the title(s) acquired by the Library. Brill MyBook is a print-on-demand paperback copy which is sold at a favorably uniform low price.

Access this article

+ Tax (if applicable)
Add to Favorites
You must be logged in to use this functionality

image of Nematology
For more content, see Nematologica.

A recombinant inbred line population of soybean (Glycine max) was utilised to identify the quantitative trait loci (QTLs) determining the response to infection by two root-knot nematode species, Meloidogyne incognita and M. hapla, in glasshouse assays. QTL analysis detected seven major and four minor QTLs on seven soybean chromosomes ((Chrs) 1, 7, 8, 10, 14, 18, 20) explaining 6-41% phenotypic variance (PVE) for M. incognita root response and nematode reproduction. Three of the major QTLs, on Chrs 7, 10 and 18, were confirmed in previous reports and two major QTLs on Chrs 14 and 20 were detected for the first time. The QTL analysis with M. hapla provides the first report of a major QTL region mapped on Chr 7, explaining 70-82% PVE in M. hapla root response and nematode reproduction. These novel identified QTLs with flanking markers will be helpful in marker-assisted breeding for nematode resistance in soybean.

Affiliations: 1: 1Key Laboratory of Mollisols Agroecology, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Harbin 150081, P. R. China ; 2: 2Key Laboratory of Molecular Design Breeding, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Harbin 150081, P. R. China ; 3: 3Research Faculty of Agriculture, Hokkaido University, Sapporo, Hokkaido 060-8589, Japan ; 4: 4School of Life Sciences, Guangzhou University, Guangzhou 510006, P. R. China

*Corresponding author, e-mail: wangcongli@iga.ac.cn
Loading

Full text loading...

/content/journals/10.1163/15685411-00003157
Loading

Data & Media loading...

1. Bridge J., Page S.L.J. (1980). "Estimation of root-knot nematode infection levels on roots using a rating chart". Tropical Pest Management Vol 26, 296-298. DOI: 10.1080/09670878009414416 [Crossref]
2. Churchill G.A., Doerge R.W. (1994). "Empirical threshold values for quantitative trait mapping". Genetics Vol 138, 963-971.
3. Collard B.C.Y., Jahufer M.Z.Z., Brouwer J.B., Pang E.C.K. (2005). "An introduction to markers, quantitative trait loci (QTL) mapping and marker-assisted selection for crop improvement: the basic concepts". Euphytica Vol 142, 169-196. DOI: 10.1007/s10681-005-1681-5 [Crossref]
4. Concibido V.C., Diers B.W., Arelli P.R. (2004). "A decade of QTL mapping for cyst nematode resistance in soybean". Crop Science Vol 44, 1121-1131. DOI: 10.2135/cropsci2004.1121 [Crossref]
5. Fassuliotis G., Deakin J.R., Hoffman J.C. (1970). "Root-knot nematode resistance in snap beans: breeding and nature of resistance". Journal of the American Society for Horticultural Science Vol 95, 640-645.
6. Fourie H., Mc Donald A.H., Loots G.C. (1999). "Host suitability of south African commercial soybean cultivars to two root-knot nematode species". African Plant Protection Vol 2, 119-124.
7. Fourie H., Mienie C.M.S., Mc Donald A.H., De Waele D. (2008). "Identification and validation of genetic markers associated with Meloidogyne incognita race 2 resistance in soybean, Glycine max (L.) Merr". Nematology Vol 10, 651-661. DOI: 10.1163/156854108785787235 [Crossref]
8. Fourie H., Mc Donald A.H., De Waele D. (2010). "Relationships between initial population densities of Meloidogyne incognita race 2 and nematode population development in terms of variable soybean resistance". Journal of Nematology Vol 42, 55-61.
9. Fourie H., Mc Donald A., De Waele D. (2013). "Host and yield responses of soybean genotypes resistant or susceptible to Meloidogyne incognita in vivo". International Journal of Pest Management Vol 59, 111-121. DOI: 10.1080/09670874.2013.772261 [Crossref]
10. Fourie H., De Waele D., Mc Donald A.H., Mienie C., Marais M. (2015). "Nematode pests threatening soybean production in South Africa, with reference to Meloidogyne". South African Journal of Science Vol 111, 1-9. DOI: 10.17159/sajs.2015/20140212 [Crossref]
11. Gutiérrez O.A., Jenkins J.N., McCarty J.C., Wubben M.J., Hayes R.W., Callahan F.E. (2010). "SSR markers closely associated with genes for resistance to root-knot nematode on chromosomes 11 and 14 of upland cotton". Theoretical & Applied Genetics Vol 121, 1323-1337. DOI: 10.1007/s00122-010-1391-9 [Crossref]
12. Ha B.K., Bennett J.B., Hussey R.S., Finnerty S.L., Boerma H.R. (2004). "Pedigree analysis of a major QTL conditioning soybean resistance to southern root-knot nematode". Crop Science Vol 44, 758-763. DOI: 10.2135/cropsci2004.0758 [Crossref]
13. Ha B.K., Hussey R.S., Boerma H.R. (2007). "Development of SNP assays for marker-assisted selection of two southern root-knot nematode resistance QTL in soybean". Crop Science Vol 47(S2), S73-S82. DOI: 10.2135/cropsci2006.10.0660tpg [Crossref]
14. Harris D.K., Boerma H.R., Hussey R.S., Finnerty S.L. (2003). "Additional sources of soybean germplasm resistant to two species of root-knot nematode". Crop Science Vol 43, 1848-1851. DOI: 10.2135/cropsci2003.1848 [Crossref]
15. Hartman K., Sasser J.N. (1985). "Identification of Meloidogyne species on the basis of differential hosts test and perineal pattern morphology". In: Barker K.R., Carter C.C., Sasser J.N. (Eds). An advanced treatise on Meloidogyne. volume II, methodology. A cooperative publication of the Department of Plant Pathology and the United States Agency for International Development. Raleigh, NC, USA, North Carolina State University Graphics, pp.  69-77.
16. He Y., Kumar P., Shen X., Davis R.F., Van Becelaere G., May O.L., Nichols R., Chee P. (2014). "Re-evaluation of the inheritance for root-knot nematode resistance in the Upland cotton germplasm line M-120 RNR revealed two epistatic QTLs conferring resistance". Theoretical & Applied Genetics Vol 127, 1343-1351. DOI: 10.1007/s00122-014-2302-2 [Crossref]
17. Hussey R.S., Barker K.R. (1973). "A comparison of methods of collecting inocula of Meloidogyne spp., including a new technique". Plant Disease Reporter Vol 57, 1025-1028.
18. Hussey R.S., Boerma H.R., Raymer P.L., Luzzi B.M. (1991). "Resistance in soybean cultivars from maturity groups V-VIII to soybean cyst and root-knot nematodes". Journal of Nematology Vol 23, 576-583.
19. Jiao Y., Vuong T.D., Liu Y., Li Z., Noe J., Robbins R.T., Joshi T., Xu D., Shannon J.G., Nguyen H.T. (2015). "Identification of quantitative trait loci underlying resistance to southern root-knot and reniform nematodes in soybean accession PI 567516C". Molecular Breeding Vol 35, 1-10. DOI: 10.1007/s11032-015-0330-5 [Crossref]
20. Kong F., Liu B., Xia Z., Sato S., Kim B., Watanabe S., Yamada T., Tabata S., Kanazawa A., Harada K. , et al (2010). "Two coordinately regulated homologs of FLOWERING LOCUS T are involved in the control of photoperiodic flowering in soybean". Plant Physiology Vol 154, 1220-1231. DOI: 10.1104/pp.110.160796 [Crossref]
21. Kong F., Nan H., Cao D., Li Y., Wu F., Wang J., Lu S., Yuan X., Cober E.R., Abe J. , et al (2014). "A new dominant gene E9 conditions early flowering and maturity in soybean". Crop Science Vol 54, 1-7. DOI: 10.2135/cropsci2014.03.0228 [Crossref]
22. Lee J., Kim H., Robbins R.T., Wrather J.A., Bond J., Nguyen H.T., Shannon J.G. (2015). "Reaction of soybean cyst nematode resistant plant introductions to root-knot and reniform nematodes". Plant Breeding and Biotechnology Vol 3, 346-354. DOI: 10.9787/PBB.2015.3.4.346 [Crossref]
23. Li C., Hua C., Hu Y., You J., Mao Y., Li J., Tian Z., Wang C. (2016a). "Response of soybean genotypes to Meloidogyne incognita and M. hapla in Heilongjiang Province in China". Russian Journal of Nematology Vol 24, 89-98.
24. Li C., Hu Y., Hua C., Wang C. (2016b). "Identification of species and races of root-knot nematodes in greenhouse from Daqing city in Heilongjiang Province". Soils and Crops Vol 5, 105-109. DOI: 10.11689/j.issn.2095-2961.2016.02.006
25. Li Z., Jakkula L., Hussey R., Tamulonis J., Boerma H. (2001). "SSR mapping and confirmation of the QTL from PI96354 conditioning soybean resistance to southern root-knot nematode". Theoretical & Applied Genetics Vol 103, 1167-1173. DOI: 10.1007/s001220100 [Crossref]
26. Liao J., Jiang H., Sun L., Hu X., Zhang Z., Wang X. (2003). "Identification of species and race of root-knot nematodes on crops in southern China". Journal of Huazhong Agricultural University Vol 22, 544-548.
27. Liu B., Fujita T., Yan Z., Sakamoto S., Xu D., Abe J. (2007). "QTL mapping of domestication-related traits in soybean (Glycine max)". Annals of Botany Vol 100, 1027-1038. DOI: 10.1093/aob/mcm149 [Crossref]
28. Liu B., Kanazawa A., Matsumura H., Takahashi R., Harada K., Abe J. (2008). "Genetic redundancy in soybean photoresponses associated with duplication of the phytoChrome A gene". Genetics Vol 180, 995-1007. DOI: 10.1534/genetics.108.092742 [Crossref]
29. Liu B., Watanabe S., Uchiyama T., Kong F., Kanazawa A., Xia Z.J., Nagamatsu A., Arai M., Yamada T., Kitamura K. , et al (2010). "The soybean stem growth habit gene Dt1 is an ortholog of Arabidopsis TERMINAL FLOWER1". Plant Physiology Vol 153, 198-210. DOI: 10.1104/pp.109.150607 [Crossref]
30. Lu S., Li Y., Wang J., Nan H., Cao D., Li X., Shi D., Fang C., Shi X., Yuan X. , et al (2015). "Identification of additional QTLs for flowering time by removing the effect of the maturity gene E1 in soybean". Journal of Integrative Agriculture Vol 15, 42-49. DOI: 10.1016/S2095-3119(15)61046-2 [Crossref]
31. Luzzi B.M., Boerma H.R., Hussey R.S. (1987). "Resistance to three species of root-knot nematode in soybean". Crop Science Vol 27, 258-262. DOI: 10.2135/cropsci1987.0011183X002700020027x [Crossref]
32. Luzzi B.M., Boerma H.R., Hussey R.S. (1994a). "A gene for resistance to the southern root-knot nematode in soybean". Journal of Heredity Vol 85, 484-486. DOI: 10.1093/oxfordjournals.jhered.a111505 [Crossref]
33. Luzzi B.M., Boerma H.R., Hussey R.S. (1994b). "Inheritance of resistance to the southern root-knot nematode in soybean". Crop Science Vol 34, 1240-1243. DOI: 10.2135/cropsci1994.0011183X003400050018x [Crossref]
34. Moens M., Perry R.N., Starr J.L. (2009). "Meloidogyne species: a diverse group of novel and important plant parasites". In: Perry R.N., Moens M., Starr J.L. (Eds). Root-knot nematodes. Wallingford, UK, CAB International, pp.  1-17. DOI: 10.1079/9781845934927.0001 [Crossref]
35. Nicol J.M., Turner S.J., Coyne D.L., den Nijs L., Hockland S., Maafi T.Z. (2011). "Current nematode threats to world agriculture". In: Jones J., Gheysen G., Fenoll C. (Eds). Genomics and molecular genetics of plant-nematode interactions. Dordrecht, The Netherlands, Springer, pp.  21-43. DOI: 10.1007/978-94-007-0434-3_2 [Crossref]
36. Omwega C.O., Thomason I.J., Robert P.A. (1988). "A nondestructive technique for screening bean germ plasm for resistance to Meloidogyne incognita". Plant Disease Vol 72, 970-972. DOI: 10.1094/PD-72-0970 [Crossref]
37. Pham A.T., McNally K., Abdel-Haleem H., Boerma R.H., Li Z. (2013). "Fine mapping and identification of candidate genes controlling the resistance to southern root-knot nematode in PI 96354". Theoretical & Applied Genetics Vol 126, 1825-1838. DOI: 10.1007/s00122-013-2095-8 [Crossref]
38. Roberts P.A. (1995). "Conceptual and practical aspects of variability in root-knot nematodes related to host plant resistance". Annual Review of Phytopathology Vol 33, 199-221. DOI: 10.1146/annurev.py.33.090195.001215 [Crossref]
39. Roberts P.A., Matthews W.C., Ehlers J.D., Helms D. (2008). "Genetic determinants of differential resistance to root-knot nematode reproduction and galling in lima bean". Crop Science Vol 48, 553-561. DOI: 10.2135/cropsci2007.07.0384 [Crossref]
40. Schmitt D.P., Noel G.R. (1984). "Nematode parasites of soybean". In: Nickle W.R. (Ed.). Plant and insect nematodes. New York, USA, Marcel Dekker, pp.  13-59.
41. Shearin Z.P., Finnerty S.L., Wood E.D., Hussey R.S., Boerma H.R. (2009). "A southern root-knot nematode resistance QTL linked to the T-locus in soybean". Crop Science Vol 49, 467-472. DOI: 10.2135/cropsci2007.12.0690 [Crossref]
42. Shepherd R.L. (1979). "A quantitative technique for evaluation cotton for root-knot nematode resistance". Phytopathology Vol 69, 427-430. DOI: 10.1094/Phyto-69-427 [Crossref]
43. Song Q.J., Marek L.F., Shoemaker R.C., Lark K.G., Concibido V.C., Delannay X., Specht J.E., Cregan P.B. (2004). A new integrated genetic linkage map of the soybean. Agronomy and Horticulture – Faculty Publications. http://digitalcommons.unl.edu/agronomyfacpub/21. DOI: 10.1007/s00122-004-1602-3
44. Takuno S., Terauchi R., Innan H. (2012). "The power of QTL mapping with RILs". PLoS ONE Vol 7(10), e46545. DOI: 10.1371/journal.pone.0046545 [Crossref]
45. Tamulonis J., Luzzi B.M., Hussey R.S., Parrott W.A., Boerma H.R. (1997a). "RFLP mapping of resistance to southern root-knot nematode in soybean". Crop Science Vol 37, 1903-1909. DOI: 10.2135/cropsci1997.0011183X003700060039x [Crossref]
46. Tamulonis J.P., Luzzi B.M., Hussey R.S., Parrott W.A., Boerma H.R. (1997b). "DNA markers associated with resistance to Javanese root-knot nematode in soybean". Crop Science Vol 37, 83-788. DOI: 10.2135/cropsci1997.0011183X003700030015x
47. Tamulonis J.P., Luzzi B.M., Hussey R.S., Parrott W.A., Boerma H.R. (1997c). "DNA marker analysis of loci conferring resistance to peanut root-knot nematode in soybean". Theoretical & Applied Genetics Vol 95, 664-670. DOI: 10.1007/s001220050610 [Crossref]
48. Thomas V.P., Williamson V.M. (2013). "Segregation and mapping in the root-knot nematode Meloidogyne hapla of quantitatively inherited traits affecting parasitism". Phytopathology Vol 103, 935-940. DOI: 10.1094/PHYTO-03-13-0074-R [Crossref]
49. Van Ooijen J.W. (2004). MapQTL® 5, software for the mapping of quantitative trait loci in experimental populations. Wageningen, The Netherlands, Kyazma B.V.
50. Van Ooijen J.W. (2006). JoinMap® 4.0 software for the calculations of genetic linkage maps in experimental populations. Wageningen, The Netherlands, Kyazma B.V.
51. Walters S.A., Barker K.R. (1994). "Current distribution of five major Meloidogyne species in the United States". Plant Disease Vol 78, 772-774. DOI: 10.1094/PD-78-0772 [Crossref]
52. Wang C., Ulloa M., Roberts P.A. (2006). "Identification and mapping of microsatellite markers linked to a root-knot nematode resistance gene (rkn1) in Acala NemX cotton (Gossypium hirsutum L.)". Theoretical & Applied Genetics Vol 112, 770-777. DOI: 10.1007/s00122-005-0183-0 [Crossref]
53. Wang C., Ulloa M., Mullens T.R., Yu J.Z., Roberts P.A. (2012). "QTL analysis for transgressive resistance to root-knot nematode in interspecific cotton (Gossypium spp.) progeny derived from susceptible parents". PLoS ONE Vol 7(4), e34874. DOI: 10.1371/journal.pone
54. Wang C., Ulloa M., Duong T.T., Roberts P.A. (2017a). "QTL analysis of transgressive nematode resistance in tetraploid cotton reveals complex interactions in chromosome 11 regions". Frontiers in Plant Science Vol 8, 1979. DOI: 10.3389/fpls.2017.01979
55. Wang C., Ulloa M., Duong T.T., Roberts P.A. (2017b). QTL mapping of multiple independent loci for resistance to Fusarium oxysporum f. sp. vasinfectum races 1 and 4 in an interspecific cotton population. Phytopathology, in press. DOI: 10.1094/PHYTO-06-17-0208-R
56. Watanabe S., Xia Z., Hideshima R., Tsubokura Y., Sato S., Yamanaka N., Takahashi R., Anai T., Satoshi T., Kitamura K. , et al (2011). "A map-based cloning strategy employing a residual heterozygous line reveals that the GIGANTEA gene is involved in soybean maturity and flowering". Genetics Vol 188, 395-407. DOI: 10.1534/genetics.110.125062 [Crossref]
57. Williamson V.M., Gleason C.A. (2003). "Plant-nematode interactions". Current Opinion in Plant Biology Vol 6, 327-333. DOI: 10.1016/S1369-5266(03)00059-1 [Crossref]
58. Williamson V.M., Hussey R.S. (1996). "Nematode pathogenesis and resistance in plants". Plant Cell Vol 8, 1735-1745. DOI: 10.1105/tpc.8.10.1735 [Crossref]
59. Windham G.L., Williams W. (1987). "Host suitability of commercial corn hybrids to Meloidogyne arenaria and M. incognita". Journal of Nematology Vol 1, 13-16.
60. Windham G.L., Williams W.P. (1988). "Reproduction of Meloidogyne javanica on corn hybrids and inbreds". Journal of Nematology Vol 20 (Annals 2), 25-28.
61. Wrather J.A., Koenning S.R. (2006). "Estimates of disease effects on soybean yields in the United States 2003 to 2005". Journal of Nematology Vol 38, 173-180.
62. Wrather J.A., Chambers A.Y., Fox J.A., Moore W.F., Sciumbato G.L. (1995). "Soybean disease loss estimates for the southern United States, 1974-1994". Plant Disease Vol 79, 1076-1079.
63. Xia Z., Watanabe S., Yamada T., Tsubokura Y., Nakashima H., Zhai H., Anai T., Sato S., Yamazaki T., S. , et al (2012). "Positional cloning and characterization reveal the molecular basis for soybean maturity locus E1 that regulates photoperiodic flowering". Proceedings of the National Academy of Sciences of the United States of America Vol 109, E2155-E2164. DOI: 10.1073/pnas.1117982109 [Crossref]
64. Xu X., Zeng L., Tao Y., Vuong T., Wan J., Boerma R., Noe J., Li Z., Finnerty S., Pathan S.M. , et al (2013). "Pinpointing genes underlying the quantitative trait loci for root-knot nematode resistance in palaeopolyploid soybean by whole genome resequencing". Proceedings of the National Academy of Sciences of the United States of America Vol 110, 13469-13474. DOI: 10.1073/pnas.1222368110 [Crossref]
65. Yates J.L., Hussey R.S., Finnerty S.L., Boerma H.R. (2010). "Three soybean plant introductions possess unique resistance to peanut root-knot nematode". Crop Science Vol 50, 118-122. DOI: 10.2135/cropsci2009.02.0059 [Crossref]
66. Zhao L., Duan Y., Bai C., Chen L., Zhu X., Sun X. (2010). "Identification and distribution of root-knot nematodes in Liaoning Province". Hubei Agricultural Sciences Vol 49, 865-868.
http://brill.metastore.ingenta.com/content/journals/10.1163/15685411-00003157
Loading

Article metrics loading...

/content/journals/10.1163/15685411-00003157
2018-06-28
2018-09-26

Sign-in

Can't access your account?
  • Tools

  • Add to Favorites
  • Printable version
  • Email this page
  • Subscribe to ToC alert
  • Get permissions
  • Recommend to your library

    You must fill out fields marked with: *

    Librarian details
    Your details
    Why are you recommending this title?
    Select reason:
     
    Nematology — Recommend this title to your library
  • Export citations
  • Key

  • Full access
  • Open Access
  • Partial/No accessInformation