Cookies Policy
X

This site uses cookies. By continuing to browse the site you are agreeing to our use of cookies.

I accept this policy

Find out more here

Phylogenetic Analysis of Ridgewayia (Copepoda: Calanoida) from the Galapagos and of a New Species from the Florida Keys With a Reevaluation of the Phylogeny of Calanoida

No metrics data to plot.
The attempt to load metrics for this article has failed.
The attempt to plot a graph for these metrics has failed.
The full text of this article is not currently available.

Brill’s MyBook program is exclusively available on BrillOnline Books and Journals. Students and scholars affiliated with an institution that has purchased a Brill E-Book on the BrillOnline platform automatically have access to the MyBook option for the title(s) acquired by the Library. Brill MyBook is a print-on-demand paperback copy which is sold at a favorably uniform low price.

Access this article

+ Tax (if applicable)
Add to Favorites

image of Journal of Crustacean Biology

Abstract The mitochondrial gene cytochrome-c oxidase subunit 1 (COI) and the nuclear ribosomal DNA region known as Internal Transcribed Spacer 1 (ITS1) are used in a phylogenetic analysis of Ridgewayia from the Galapagos Islands and of a new species, Ridgewayia tortuga, from the Florida Keys. In addition, the phylogeny of Calanoida is reconstructed based on the 18S ribosomal RNA gene. The following characters exclude R. tortuga from the three recognized species groups of Ridgewayia: the presence of only 7 setae on the terminal endopod segment of leg 2; a 20-segmented male right antennule with two geniculations, the first between segments 9 and 10 and the second between segments 16 and 17; and details of the male fifth leg, in particular the elongate, unarmed, right endopod with a bifurcated tip. The molecular analysis shows that the first half of the COI gene not only fails to differentiate the various species of Ridgewayia, but it also fails to differentiate between the families Ridgewayiidae and Pseudocyclopidae. The second half of this gene and the ITS1 region are species specific. Molecular and morphological evidence suggest that the Galapagos ridgewayiids are the result of one colonization event and that the current phylogeography of these animals can be explained by a combination of vicariance and active migration models. The 18S ribosomal RNA gene proves successful in the reconstruction of the phylogeny of Calanoida with the following main conclusions: 1) Centropagoidea is the sister branch to all other Calanoida; 2) Ridgewayiidae and Pseudocyclopidae likely share a common ancestor with Augaptiloidea; 3) Ridgewayiidae and Pseudocyclopidae should be included in the same superfamily, the Pseudocyclopoidea; and 4) Spinocalanoidea likely needs to be included in Clausocalanoidea to recover the monophyly of the latter superfamily.

Affiliations: 1: College of Oceanic and Atmospheric Sciences, 104 COAS Admin Bldg, Oregon State University, Corvallis Oregon 97331-5503

Loading

Full text loading...

/content/journals/10.1651/10-3341.1
Loading

Data & Media loading...

1. Andronov V. N. 1974 "Phylogenetic relations of large taxa within the suborder Calanoida (Crustacea, Copepoda)" Zoologicheskii Zhurnal Vol 53 1002 1012
2. Andronov V. N. 1991 "On renaming of some taxa in Calanoida (Crustacea)" Zoologicheskii Zhurnal Vol 70 133 134
3. Andronov V. N. 2007 "New genus and species of copepods (Crustacea, Calanoida) from the central-eastern Atlantic and problems of classification of the Superfamilies Pseudocyclopoidea and Epacteriscoidea.]" Zoologicheskii Zhurnal Vol 86 671 683
4. Barthélémy R. M. , Ohtsuka S. , Cuoc C. 1998 "Description and female genital structures of a new species of the demersal calanoid copepod Ridgewayiafrom southern Japan" Journal of Natural History, London Vol 32 1303 1318 http://dx.doi.org/10.1080/00222939800770651
5. Bensasson D. , Zhang D. , Hartl D. L. , Hewitt G. M. 2001 "Mitochondrial pseudogenes: evolution's misplaced withnesses" TRENDS in Ecology and Evolution Vol 16 314 321 http://dx.doi.org/10.1016/S0169-5347(01)02151-6
6. Benson D. A. , Karsch-Mizrachi I. , Lipman D. J. , Ostell J. , Wheeler D. L. 2005 GenBank Nucleic Acids Research pp. D34 D38
7. Bowman T. E. , Abele L. G. 1982 "Classification of the recent Crustacea" pp. 1 27 In, Bliss D. E. (ed.) Biology of Crustacea, volume 1 Academy Press New York
8. Boxshall G. A. 1989 "Colonization of inland marine caves by misophrioid copepods" Journal of Zoology, London Vol 219 521 526
9. Boxshall G. A. , Halsey S. H. 2004 An Introduction to Copepod Diversity Ray Society London
10. Boxshall G. A. , Jaume D. 2000 "On the Origin of Misophrioid Copepods (Crustacea) from Anchialine Caves" Crustaceana Vol 72 957 963 http://dx.doi.org/10.1163/156854099503852
11. Bradford-Grieve J. M. 2002 "Colonization of the pelagic realm by calanoid copepods" Hydrobiologia Vol 485 223 244 http://dx.doi.org/10.1023/A:1021373412738
12. Braga E. , Zardoya R. , Meyer A. , Yen J. 1999 "Mitochondrial and nuclear rRNA based copepod phylogeny with emphasis on the Euchaetidae (Calanoida)" Marine Biology Vol 133 79 90 http://dx.doi.org/10.1007/s002270050445
13. Bucklin A. , Frost B. W. , Bradford-Grieve J. , Allen L. D. , Copley N. J. 2003 "Molecular systematic and phylogenetic assessment of 34 calanoid copepod species of the Calanidae and Clausocalanidae" Marine Biology Vol 142 333 343
14. Chu K. H. , Li C. P. , Ho H. Y. 2001 "The first internal transcribed spacer (ITS-1) of ribosomal DNA as a molecular marker for phylogenetic and population analyses in Crustacea" Marine Biotechnology Vol 3 355 361 http://dx.doi.org/10.1007/s10126001-0014-5
15. Danielopol D. L. , Baltanas A. , Humphreys W. F. 2000 " Danielopolina kornickerisp. n. (Ostracoda, Thaumatocypridoidea) from a western Australian anchialine cave: morphology and evolution" Zoologica Scripta Vol 29 1 16 http://dx.doi.org/10.1046/j.1463-6409.2000.00027.x
16. Davis A. D. , Weatherby T. M. , Hartline D. K. , Lenz P. H. 1999 "Myelin-like sheaths in copepod axons" Nature Vol 398 571 http://dx.doi.org/10.1038/19212
17. Duran S. , Pascual M. , Turon X. 2004 "Low levels of genetic variation in mtDNA sequences over the western Mediterranean and Atlantic range of the sponge Crambe crambe(Poecilosclerida)" Marine Biology Vol 144 31 35 http://dx.doi.org/10.1007/s00227-003-1178-5
18. Edmands S. 2001 "Phylogeography of the intertidal copepod Tigriopus californicusreveals substantially reduced population differentiation at northern latitudes" Molecular Ecology Vol 10 1743 1750 http://dx.doi.org/10.1046/j.0962-1083.2001.01306.x
19. Elvers D. , Bottger-Schnack R. , Blohm D. , Hagen W. 2006 "Sympatric size variants of the microcopepod Oncaea venusta exhibit distinct lineages in DNA sequences" Marine Biology Vol 149 503 513 http://dx.doi.org/10.1007/s00227-005-0234-8
20. Erpenbeck D. , Hooper J. N. A. , Wörheide G. 2006 "CO1 phylogenies in diploblasts and the “Barcoding of Life” - are we sequencing a suboptimal partition?" Molecular Ecology Notes Vol 6 550 553 http://dx.doi.org/10.1111/j.1471-8286.2005.01259.x
21. Ferrari F. D. 1995 "Six copepodid stages of Ridgewayia klausruetzleri, a new species of calanoid copepod (Ridgewayiidae) from the barrier reef in Belize, with comments on appendage development" Proceedings of the Biological Society of Washington Vol 108 180 200
22. Ferrari F. D. , Ivanenko V. N. 2008 "The identity of protopodal segments and the ramus of maxilla 2 of copepods (copepoda)" Crustaceana Vol 81 823 835 http://dx.doi.org/10.1163/156854008784771702
23. Ferrari F. D. , Steinberg D. 1993 " Scopalatum vorax(Esterly, 1911) and Scolecithricella lobophara(Park, 1970), calanoid copepods (Scolecitrichidae) associated with a pelagic tunicate in Monterey Bay" Proceedings of the Biological Society of Washington Vol 106 467 489
24. Figueroa D. F. , Hoefel K. L. 2008 "Description of two new species of Ridgewayia(Copepoda: Calanoida) from anchialine caves in the Galapagos Archipelago" Journal of Crustacean Biology Vol 28 137 147 http://dx.doi.org/10.1651/06-2821R.1
25. Fleminger A. 1983 "Description and phylogeny of Isaacsicalanus paucisetus, n. gen., n. sp., (Copepoda: Calanoida: Spinocalanidae) from an East Pacific hydrothermal vent site (21°N)" Proceedings of the Biological Society of Washington Vol 96 605 622
26. Folmer O. , Black M. , Hoen W. , Lutz R. , V. R. 1994 "DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metozoan invertebrates" Molecular Marine Biology and Biotechnology Vol 3 294 299
27. Fosshagen A. , Iliffe T. M. 1989 " Boholina, a new genus (Copepoda: Calanoida) with two new species from an anchialine cave in the Philippines" Sarsia, Bergen Vol 74 201 208
28. Fosshagen A. , Iliffe T. M. 1991 "A new genus of calanoid copepod from an anchialine cave in Belize" Bulletin of the Plankton Society of Japan, Special Volume Vol 1991 339 346
29. Fosshagen A. , Iliffe T. M. 1998 "A new genus of the Ridgewayiidae (Copepoda, Calanoida) from an anchialine cave in the Bahamas" Journal of Marine Systems Vol 15 373 380 http://dx.doi.org/10.1016/S0924-7963(97)00071-7
30. Fosshagen A. , Boxshall G. A. , Iliffe T. M. 2001 "The Epacteriscidae, a cave-living family of calanoid copepods" Sarsia, Bergen Vol 86 245 318
31. Goetze E. 2005 "Global population genetic structure and biogeography of the oceanic copepods, Eucalanus hyalinusand E. spinifer " Evolution Vol 59 2378 2398
32. Grice G. D. 1964 "Two new species of calanoid copepods from the Galapagos islands with remarks on the identity of three other species" Crustaceana Vol 6 255 264 http://dx.doi.org/10.1163/156854064X00029
33. Hart C. W. J. , Manning R. B. , Iliffe T. M. 1985 "The fauna of Atlantic marince caves: evidence of dispersal by sea floor spreasing while maintaining ties to deep waters" Proceedings of the Biological Society of Washington Vol 98 288 292
34. Hebert P. D. N. , Ratnasingham S. , deWaard J. R. 2003 "Barcoding animal life: cytochrome c oxidase subunit 1 divergences among closely related species" Proceedings of the Royal Society B Vol 270 96 99 http://dx.doi.org/10.1098/rsbl.2003.0025
35. Hellberg M. E. 2006 "No variation and low synonymous substitution rates in coral mtDNA despite high nuclear variation" BMC Evolutionary Biology Vol 6 24 http://dx.doi.org/10.1186/1471-2148-6-24
36. Holsinger J. R. 1988 "Troglobites: the evolution of cave-dwelling organisms" American Scientist Vol 76 147 153
37. Huang D. , Meier R. , Todd P. A. , Chou L. M. 2008 "Slow Mitochondrial COI Sequence Evolution at the Base of the Metazoan Tree and Its Implications for DNA Barcoding" Journal of Molecular Evolution Vol 66 167 174 http://dx.doi.org/10.1007/s00239-008-9069-5
38. Huelsenbeck J. P. , Ronquist F. 2001 "MRBAYES: Bayesian inference of phylogeny" Bioinformatics Vol 17 754 755 http://dx.doi.org/10.1093/bioinformatics/17.8.754
39. Humes A. , Simth W. L. 1974 " Ridgewayia fosshagenin. sp. (Copepoda; Calanoida) associated with an actinarian in Panama, with observations on the nature of the association" Caribbean Journal of Science Vol 14 125 139
40. Humphreys W. F. 2000 "Relict faunas and their derivation" pp. 417 432 In, Wilkens H. , Culver D. C. , Humphreys W. F. (eds.) Ecosystems for the World 30. Subterranean Ecosystems Elsevier Amsterdam
41. Iliffe T. M. 1990 "Crevicular dispersal of marine cave faunas" Memoires de Biospeologie Vol 17 93 96
42. Iliffe T. M. 2000 "Anchialine cave ecology" pp. 59 76 In, Wilkens H. , Culver D. C. , Humphreys W. F. (eds.) Ecosystems of the World 30. Subterranean Ecosystems Elsevier Amsterdam
43. Iliffe T. M. , Wilkens H. , Parzefall J. , Williams D. 1984 "Marine lava cave fauna: composition, biogeography, and origins" Science Vol 225 309 311 http://dx.doi.org/10.1126/science.225.4659.309
44. Jaume D. , Boxshall G. A. 1996 "The persistence of an ancient marine fauna in Mediterranean waters: new evidence from misophrioid copepods living in anchialine caves" Journal of Natural History Vol 30 1583 1595 http://dx.doi.org/10.1080/00222939600770921
45. Kano Y. , Kase T. 2004 "Genetic exchange between anchialine cave populations by means of larval dispersal: the case of a new gastropod species Neritilia cavernicola " Zoologica Scripta Vol 33 423 437 http://dx.doi.org/10.1111/j.0300-3256.2004.00159.x
46. Ki J. S. , Lee K. W. , Park H. G. , Chullasorn S. , Dahms H. U. , Lee J. S. 2009 "Phylogeography of the copepod Tigriopus japonicusalong the Northwest Pacific rim" Journal of Plnakton Research Vol 31 209 221 http://dx.doi.org/10.1093/plankt/fbn100
47. Krsinic F. 2005 " Badijella jalzici– a new genus and species of calanoid copepod (Calanoida, Ridgewayiidae) from an anchialine cave on the Croatian Adriatic coast" Marine Biology Research Vol 1 281 289 http://dx.doi.org/10.1080/17451000500262025
48. Lee C. E. 2007 "Global phylogeography of a cryptic copepod species complex and reproductive isolation between genetically proximate ‘populations’" Evolution Vol 54 2014 2027 http://dx.doi.org/10.1111/j.0014-3820.2000.tb01245.x
49. Machida R. J. , Miya M. U. , Nishida M. , Nishida S. 2006 "Molecular phylogeny and evolution of the pelagic copepod genus Neocalanus(Crustacea: Copepoda)" Marine Biology Vol 148 1071 1079 http://dx.doi.org/10.1007/s00227-005-0140-0
50. Manning R. B. , Hart C. W. J. , Iliffe T. M. 1986 "Mesozoic relicts in marine caves of Bermuda" Stygologia Vol 2 156 166
51. Marinucci M. , Romi R. , Mancini P. , Di Luca M. , Severini C. 1999 "Phylogenetic relationships of seven palearctic members of the maculipennis complex inferred from ITS2 sequence analysis" Insect Molecular Biology Vol 8 469 480 http://dx.doi.org/10.1046/j.1365-2583.1999.00140.x
52. Medina M. , Weil E. , Szmant A. M. 1999 "Examination of the Montastraea annularisspecies complex (Cnidaria: Scleractinia) using ITS and COI sequences" Marine Biotechnology Vol 1 89 97 http://dx.doi.org/10.1007/PL00011756
53. Montoriol-Pous J. , Escola O. 1978 "Contribucion al conocimiento vulcanoespeleologico de la Isla Isabela, Galapagos, Ecuador" Speleon Vol 24 101 110
54. Newer M. L. , Frost B. W. , Armbrust E. V. 2008 "Population structure of the planktonic copepod Calanus pacificusin the North Pacific Ocean" Marine Biology Vol 156 107 115 http://dx.doi.org/10.1007/s00227-008-1068-y
55. Nylander J. A. A. 2004 MrModeltest v2. Program distributed by the author Evolutionary Biology Centre Uppsala University
56. Ohtsuka S. , Huys R. 2001 "Sexual dimorphism in calanoid copepods: morphology and function" Hydrobiologia Vol 453/454 441 466 http://dx.doi.org/10.1023/A:1013162605809
57. Ohtsuka S. , Fosshagen A. , Putchakarn S. 1999 "Three new species of the demersal calanoid copepod Pseudocyclopsfrom Phuket, Thailand" Plankton Biology and Ecology Vol 46 132 147
58. Ohtsuka S. , Kase T. , Boxshall G. A. 2000 "A new species of Ridgewayia(Copepoda: Calanoida) from a submarine cave in Palau, western Pacific" Species Diversity Vol 5 201 213
59. Park T. S. 1986 "Phylogeny of calanoid copepods" Syllogeus Vol 58 191 196
60. Peck S. , Peck J. 1986 "The Galapagos Islands: Volcanic caves and cave fauna of the Galapagos Islands" The Canadian caver Vol 18 42 50
61. Por F. D. 1979 "The Copepoda of Di Zahav Pool (Gulf of Elat, Red Sea)" Crustaceana, Leiden Vol 37 13 30 http://dx.doi.org/10.1163/156854079X00825
62. Posada D. , Crandall K. 1998 "Modeltest: testing the model of DNA substitution" Bioinformatics Vol 14 817 818 http://dx.doi.org/10.1093/bioinformatics/14.9.817
63. Razouls C. , Carola M. 1996 "The presence of Ridgewayia marki minorcaensisn. ssp. in the western Mediterranean" Crustaceana, Leiden Vol 69 47 55 http://dx.doi.org/10.1163/156854096X00060
64. Rocha-Olivares A. , Fleeger J. W. , Foltz D. W. 2001 "Decoupling of molecular and morphological evolution in deep lineages of a meiobenthic harpacticoid copepod" Molecular Biology and Evolution Vol 18 1088 1102 http://dx.doi.org/10.1093/oxfordjournals.molbev.a003880
65. Sars G. O. 1903 "An account of the Crustacea of Norway with short descriptions and figures of all the species. Copepoda Calanoida" The Bergem Museum Vol 4 1 171
66. Schizas N. V. , Street G. T. , Coull B. C. , Chandler G. T. , Quattro J. M. 1999 "Molecular population structure of the marine benthic copepod Microarthridion littoralealong the southeastern and Gulf coasts of the U.S.A" Marine Biology Vol 135 399 405 http://dx.doi.org/10.1007/s002270050640
67. Schroder H. C. , Efremova S. M. , Itskovich V. B. , Belikov S. , Masuda Y. , Krasko A. , Müller I. M. , Muller W. E. G. 2003 "Molecular phylogeny of the freshwater sponges in Lake Baikal" Journal of Zoological Systematics and Evolutionary Research Vol 41 80 86 http://dx.doi.org/10.1046/j.1439-0469.2003.00199.x
68. Snell T. L. , Foltz D. W. , Sammarco P. W. 1998 "Variation in morphology vs conservation of a mitochondrial gene in Montastraea cavernosa (Cnidaria, Scleractinia)" Gulf of Mexico Science Vol 2 188 195
69. Stock J. H. 1980 "Regression model evolution as exemplified by the genus Pseudoniphargus(Amphipoda)" Bijdragen tot de Dierkunde Vol 50 105 144
70. Stock J. H. 1993 "Some remarkable distribution patterns in stygobiont Amphipoda" Journal of Natural History Vol 27 807 819 http://dx.doi.org/10.1080/00222939300770491
71. Stock J. H. 1994 "Biogeographic synthesis of the insular groundwater faunas of the (sub) tropical Atlantic" Hydrobiologia Vol 287 105 117 http://dx.doi.org/10.1007/BF00006900
72. Suarez-Morales E. , Iliffe T. M. 2007 "A new genus of Ridgewayiidae (Copepoda: Calanoida) from a karstic cave of the western Caribbean" Journal of Natural History Vol 27 339 350
73. Swofford D. L. 2009 PAUP*4.0: Phylogenetic analysis using parsimony (* and other methods) Sinnauer Associates Sunderland
74. Thompson I. C. , Scott A. 1903 "Report on the Copepoda collected by Professor Herdman, at Ceylon, in 1902" In, Herdman W. A. Report to the Government of Ceylon on the Pearl Oyster Fisheries of the Gulf of Manaar Vol 1, suppl. 7 227 307
75. Ummerkutty A. N. P. 1963 "Studies on Indian copepods. 7. On two calanoid copepods, Ridgewayia typicaThompson and Scott and Ridgewayia krishnaswamyin. sp. [sic]" Bulletin of the Department of Marine Biology and Oceanography, University of Kerala Vol 1 15 28
76. Wilson M. S. 1958 "A review of the copepod genus Ridgewayia(Calanoida) with descriptions of new species from the Dry Tortugas, Florida" Proceedings of the United States National Museum Vol 108 137 179 http://dx.doi.org/10.5479/si.00963801.108-3398.137
77. Worheide G. 2006 "Low variation in partial cytochrome oxidase subunit I (COI) mitochondrial sequences in the coralline demosponge Astrosclera willeyanaacross the Indo-Pacific" Marine Biology Vol 148 907 912 http://dx.doi.org/10.1007/s00227-005-0134-y
78. Yeatman H. C. 1969 "A redescription of copepod, Ridgewayia marki,with description of an unusual specimen" Journal of the Tennessee Academy of Science Vol 44 7 10
http://brill.metastore.ingenta.com/content/journals/10.1651/10-3341.1
Loading

Article metrics loading...

/content/journals/10.1651/10-3341.1
2011-02-01
2016-09-26

Sign-in

Can't access your account?
  • Key

  • Full access
  • Open Access
  • Partial/No accessInformation